mpra - Analyze massively parallel reporter assays
Tools for data management, count preprocessing, and differential analysis in massively parallel report assays (MPRA).
Last updated 1 months ago
softwaregeneregulationsequencingfunctionalgenomics
5 stars 1.64 score 41 dependenciesyamss - Tools for high-throughput metabolomics
Tools to analyze and visualize high-throughput metabolomics data aquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis. At the core of these methods is a peak detection phase that pools information across all samples simultaneously. This is in contrast to other methods that detect peaks in a sample-by-sample basis.
Last updated 4 months ago
massspectrometrymetabolomicspeakdetectionsoftware
3 stars 1.38 score 68 dependenciesrsemmed - An interface to the Semantic MEDLINE database
A programmatic interface to the Semantic MEDLINE database. It provides functions for searching the database for concepts and finding paths between concepts. Path searching can also be tailored to user specifications, such as placing restrictions on concept types and the type of link between concepts. It also provides functions for summarizing and visualizing those paths.
Last updated 4 months ago
softwareannotationpathwayssystemsbiology
0.49 score 22 dependencies