mpra - Analyze massively parallel reporter assays
Tools for data management, count preprocessing, and differential analysis in massively parallel report assays (MPRA).
Last updated 24 days ago
softwaregeneregulationsequencingfunctionalgenomics
6.14 score 5 stars 13 scripts 212 downloadsyamss - Tools for high-throughput metabolomics
Tools to analyze and visualize high-throughput metabolomics data aquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis. At the core of these methods is a peak detection phase that pools information across all samples simultaneously. This is in contrast to other methods that detect peaks in a sample-by-sample basis.
Last updated 24 days ago
massspectrometrymetabolomicspeakdetectionsoftware
5.48 score 3 stars 9 scripts 280 downloadsrsemmed - An interface to the Semantic MEDLINE database
A programmatic interface to the Semantic MEDLINE database. It provides functions for searching the database for concepts and finding paths between concepts. Path searching can also be tailored to user specifications, such as placing restrictions on concept types and the type of link between concepts. It also provides functions for summarizing and visualizing those paths.
Last updated 24 days ago
softwareannotationpathwayssystemsbiology
4.00 score 8 scripts 128 downloads